Index

A

absolute_difference_func (C++ function) absolute_func (C++ function) add_image_and_scalar_func (C++ function) add_images_func (C++ function) add_images_weighted_func (C++ function) affine_transform_func (C++ function) Array (C++ class) Array::allocate (C++ function) Array::Array (C++ function) Array::c_get (C++ function) Array::check_ptr (C++ function) Array::copyTo (C++ function), [1] Array::create (C++ function), [1], [2] Array::depth (C++ function) Array::device (C++ function) Array::dim (C++ function)

Array::dimension (C++ function) Array::dtype (C++ function) Array::fill (C++ function) Array::get (C++ function) Array::height (C++ function) Array::initialized (C++ function) Array::itemSize (C++ function) Array::mtype (C++ function) Array::New (C++ function) Array::operator<< (C++ function) Array::print (C++ function) Array::readTo (C++ function), [1], [2] Array::size (C++ function) Array::width (C++ function) Array::writeFrom (C++ function), [1], [2] Array::~Array (C++ function) array_equal_func (C++ function)

B

Backend (C++ class) Backend::allocateMemory (C++ function) Backend::Backend (C++ function), [1], [2] Backend::buildKernel (C++ function) Backend::copyMemoryBufferToBuffer (C++ function) Backend::copyMemoryBufferToImage (C++ function) Backend::copyMemoryImageToBuffer (C++ function) Backend::copyMemoryImageToImage (C++ function) Backend::executeKernel (C++ function) Backend::freeMemory (C++ function) Backend::getDevice (C++ function) Backend::getDeviceFromIndex (C++ function) Backend::getDevices (C++ function) Backend::getDevicesList (C++ function) Backend::getPreamble (C++ function) Backend::getType (C++ function) Backend::operator<< (C++ function), [1] Backend::operator= (C++ function), [1] Backend::readMemory (C++ function) Backend::setMemory (C++ function) Backend::writeMemory (C++ function) Backend::~Backend (C++ function) BackendManager (C++ class) BackendManager::BackendManager (C++ function) BackendManager::cudaEnabled (C++ function)

BackendManager::getBackend (C++ function) BackendManager::getBackendsList (C++ function) BackendManager::getInstance (C++ function) BackendManager::openCLEnabled (C++ function) BackendManager::operator<< (C++ function) BackendManager::operator= (C++ function) BackendManager::setBackend (C++ function) BackendManager::~BackendManager (C++ function) binary_and_func (C++ function) binary_closing_func (C++ function) binary_dilate_func (C++ function) binary_edge_detection_func (C++ function) binary_erode_func (C++ function) binary_infsup_func (C++ function) binary_not_func (C++ function) binary_opening_func (C++ function) binary_or_func (C++ function) binary_subtract_func (C++ function) binary_supinf_func (C++ function) binary_xor_func (C++ function) block_enumerate_func (C++ function) bottom_hat_box_func (C++ function) bottom_hat_func (C++ function) bottom_hat_sphere_func (C++ function) bounding_box_func (C++ function)

C

center_of_mass_func (C++ function) centroids_of_labels_func (C++ function) clip_func (C++ function) closing_box_func (C++ function) closing_func (C++ function) closing_labels_func (C++ function) closing_sphere_func (C++ function) combine_labels_func (C++ function) concatenate_along_x_func (C++ function) concatenate_along_y_func (C++ function) concatenate_along_z_func (C++ function) connected_component_labeling_func (C++ function) connected_components_labeling_func (C++ function) convolve_func (C++ function) copy_func (C++ function) copy_horizontal_slice_func (C++ function) copy_slice_func (C++ function) copy_vertical_slice_func (C++ function) count_touching_neighbors_func (C++ function) crop_border_func (C++ function)

crop_func (C++ function) cubic_root_func (C++ function) CUDABackend (C++ class) CUDABackend::allocateMemory (C++ function) CUDABackend::buildKernel (C++ function) CUDABackend::copyMemoryBufferToBuffer (C++ function) CUDABackend::copyMemoryBufferToImage (C++ function) CUDABackend::copyMemoryImageToBuffer (C++ function) CUDABackend::copyMemoryImageToImage (C++ function) CUDABackend::executeKernel (C++ function) CUDABackend::freeMemory (C++ function) CUDABackend::getDevice (C++ function) CUDABackend::getDeviceFromIndex (C++ function) CUDABackend::getDevices (C++ function) CUDABackend::getDevicesList (C++ function) CUDABackend::getPreamble (C++ function) CUDABackend::getType (C++ function) CUDABackend::readMemory (C++ function) CUDABackend::setMemory (C++ function) CUDABackend::writeMemory (C++ function)

D

degrees_to_radians_func (C++ function) detect_label_edges_func (C++ function) detect_maxima_box_func (C++ function) detect_maxima_func (C++ function) detect_minima_box_func (C++ function) detect_minima_func (C++ function) Device (C++ class) Device::Device (C++ function) Device::finalize (C++ function) Device::finish (C++ function) Device::getInfo (C++ function) Device::getInfoExtended (C++ function) Device::getName (C++ function) Device::getPlatform (C++ function) Device::getType (C++ function) Device::initialize (C++ function)

Device::isInitialized (C++ function) Device::operator<< (C++ function), [1] Device::setWaitToFinish (C++ function) Device::supportImage (C++ function) Device::Type (C++ enum) Device::Type::CUDA (C++ enumerator) Device::Type::OPENCL (C++ enumerator) Device::~Device (C++ function) difference_of_gaussian_func (C++ function) dilate_box_func (C++ function) dilate_labels_func (C++ function) dilate_sphere_func (C++ function) dilation_func (C++ function) divide_by_gaussian_background_func (C++ function) divide_images_func (C++ function) divide_scalar_by_image_func (C++ function)

E

equal_constant_func (C++ function) equal_func (C++ function) erode_box_func (C++ function) erode_connected_labels_func (C++ function) erode_labels_func (C++ function) erode_sphere_func (C++ function) eroded_otsu_labeling_func (C++ function) erosion_func (C++ function) exclude_labels_func (C++ function)

exclude_labels_on_edges_func (C++ function) exclude_labels_outside_size_range_func (C++ function) exclude_labels_with_map_values_out_of_range_func (C++ function) exclude_labels_with_map_values_within_range_func (C++ function) exclude_large_labels_func (C++ function) exclude_small_labels_func (C++ function) exponential_func (C++ function) extend_labeling_via_voronoi_func (C++ function) extension_ratio_map_func (C++ function)

F

filter_label_by_size_func (C++ function)

flag_existing_labels_func (C++ function) flip_func (C++ function)

G

gamma_correction_func (C++ function) gauss_otsu_labeling_func (C++ function) gaussian_blur_func (C++ function) generate_binary_overlap_matrix_func (C++ function) generate_distance_matrix_func (C++ function) generate_touch_matrix_func (C++ function) gradient_x_func (C++ function) gradient_y_func (C++ function)

gradient_z_func (C++ function) grayscale_closing_func (C++ function) grayscale_dilate_func (C++ function) grayscale_erode_func (C++ function) grayscale_opening_func (C++ function) greater_constant_func (C++ function) greater_func (C++ function) greater_or_equal_constant_func (C++ function) greater_or_equal_func (C++ function)

H

hessian_eigenvalues_func (C++ function)

histogram_func (C++ function)

I

invert_func (C++ function)

J

jaccard_index_func (C++ function)

L

label_bounding_box_func (C++ function) label_pixel_count_map_func (C++ function) label_spots_func (C++ function) labelled_spots_to_pointlist_func (C++ function) laplace_box_func (C++ function)

laplace_diamond_func (C++ function) laplace_func (C++ function) large_hessian_eigenvalue_func (C++ function) local_cross_correlation_func (C++ function) logarithm_func (C++ function)

M

mask_func (C++ function) mask_label_func (C++ function) masked_voronoi_labeling_func (C++ function) maximum_box_func (C++ function) maximum_filter_func (C++ function) maximum_image_and_scalar_func (C++ function) maximum_images_func (C++ function) maximum_of_all_pixels_func (C++ function) maximum_position_func (C++ function) maximum_sphere_func (C++ function) maximum_x_projection_func (C++ function) maximum_y_projection_func (C++ function) maximum_z_projection_func (C++ function) mean_box_func (C++ function) mean_filter_func (C++ function) mean_intensity_map_func (C++ function) mean_of_all_pixels_func (C++ function) mean_sphere_func (C++ function) mean_squared_error_func (C++ function) mean_x_projection_func (C++ function) mean_y_projection_func (C++ function) mean_z_projection_func (C++ function) median_box_func (C++ function)

median_func (C++ function) median_sphere_func (C++ function) minimum_box_func (C++ function) minimum_filter_func (C++ function) minimum_image_and_scalar_func (C++ function) minimum_images_func (C++ function) minimum_of_all_pixels_func (C++ function) minimum_of_masked_pixels_func (C++ function) minimum_of_masked_pixels_reduction_func (C++ function) minimum_position_func (C++ function) minimum_sphere_func (C++ function) minimum_x_projection_func (C++ function) minimum_y_projection_func (C++ function) minimum_z_projection_func (C++ function) mode_box_func (C++ function) mode_func (C++ function) mode_sphere_func (C++ function) modulo_images_func (C++ function) morphological_chan_vese_func (C++ function) multiply_image_and_position_func (C++ function) multiply_image_and_scalar_func (C++ function) multiply_images_func (C++ function) multiply_matrix_func (C++ function)

N

nan_to_num_func (C++ function) nonzero_maximum_box_func (C++ function) nonzero_maximum_diamond_func (C++ function) nonzero_maximum_func (C++ function)

nonzero_minimum_box_func (C++ function) nonzero_minimum_diamond_func (C++ function) nonzero_minimum_func (C++ function) not_equal_constant_func (C++ function) not_equal_func (C++ function)

O

onlyzero_overwrite_maximum_box_func (C++ function) onlyzero_overwrite_maximum_diamond_func (C++ function) onlyzero_overwrite_maximum_func (C++ function) OpenCLBackend (C++ class) OpenCLBackend::allocateMemory (C++ function) OpenCLBackend::buildKernel (C++ function) OpenCLBackend::copyMemoryBufferToBuffer (C++ function) OpenCLBackend::copyMemoryBufferToImage (C++ function) OpenCLBackend::copyMemoryImageToBuffer (C++ function) OpenCLBackend::copyMemoryImageToImage (C++ function) OpenCLBackend::executeKernel (C++ function) OpenCLBackend::freeMemory (C++ function)

OpenCLBackend::getDevice (C++ function) OpenCLBackend::getDeviceFromIndex (C++ function) OpenCLBackend::getDevices (C++ function) OpenCLBackend::getDevicesList (C++ function) OpenCLBackend::getPreamble (C++ function) OpenCLBackend::getType (C++ function) OpenCLBackend::readMemory (C++ function) OpenCLBackend::setMemory (C++ function) OpenCLBackend::writeMemory (C++ function) opening_box_func (C++ function) opening_func (C++ function) opening_labels_func (C++ function) opening_sphere_func (C++ function)

P

paste_func (C++ function) pixel_count_map_func (C++ function)

power_func (C++ function) power_images_func (C++ function)

R

radians_to_degrees_func (C++ function) range_func (C++ function) read_values_from_positions_func (C++ function) reciprocal_func (C++ function) reduce_labels_to_centroids_func (C++ function) reduce_labels_to_label_edges_func (C++ function) reduce_stack_func (C++ function) relabel_sequential_func (C++ function) remove_labels_func (C++ function) remove_labels_on_edges_func (C++ function)

remove_labels_with_map_values_out_of_range_func (C++ function) remove_labels_with_map_values_within_range_func (C++ function) remove_large_labels_func (C++ function) remove_small_labels_func (C++ function) replace_intensities_func (C++ function) replace_intensity_func (C++ function) replace_value_func (C++ function) replace_values_func (C++ function) rigid_transform_func (C++ function) rotate_func (C++ function)

S

scale_func (C++ function) set_column_func (C++ function) set_func (C++ function) set_image_borders_func (C++ function) set_nonzero_pixels_to_pixelindex_func (C++ function) set_plane_func (C++ function) set_ramp_x_func (C++ function) set_ramp_y_func (C++ function) set_ramp_z_func (C++ function) set_row_func (C++ function) set_where_x_equals_y_func (C++ function) set_where_x_greater_than_y_func (C++ function) set_where_x_smaller_than_y_func (C++ function) sign_func (C++ function) small_hessian_eigenvalue_func (C++ function) smaller_constant_func (C++ function) smaller_func (C++ function) smaller_or_equal_constant_func (C++ function) smaller_or_equal_func (C++ function) smooth_connected_labels_func (C++ function)

smooth_labels_func (C++ function) sobel_func (C++ function) spots_to_pointlist_func (C++ function) square_func (C++ function) square_root_func (C++ function) squared_difference_func (C++ function) standard_deviation_box_func (C++ function) standard_deviation_func (C++ function) standard_deviation_sphere_func (C++ function) statistics_of_background_and_labelled_pixels_func (C++ function) statistics_of_labelled_pixels_func (C++ function) std_z_projection_func (C++ function) sub_stack_func (C++ function) subtract_gaussian_background_func (C++ function) subtract_image_from_scalar_func (C++ function) subtract_images_func (C++ function) sum_of_all_pixels_func (C++ function) sum_reduction_x_func (C++ function) sum_x_projection_func (C++ function) sum_y_projection_func (C++ function) sum_z_projection_func (C++ function)

T

threshold_otsu_func (C++ function) tier1 (C++ type) tier2 (C++ type) tier3 (C++ type) tier4 (C++ type) tier5 (C++ type) tier6 (C++ type) tier7 (C++ type)

tier8 (C++ type) top_hat_box_func (C++ function) top_hat_func (C++ function) top_hat_sphere_func (C++ function) translate_func (C++ function) transpose_xy_func (C++ function) transpose_xz_func (C++ function) transpose_yz_func (C++ function)

U

undefined_to_zero_func (C++ function)

V

variance_box_func (C++ function) variance_filter_func (C++ function)

variance_sphere_func (C++ function) voronoi_labeling_func (C++ function) voronoi_otsu_labeling_func (C++ function)

W

write_values_to_positions_func (C++ function)

X

x_position_of_maximum_x_projection_func (C++ function)

x_position_of_minimum_x_projection_func (C++ function)

Y

y_position_of_maximum_y_projection_func (C++ function)

y_position_of_minimum_y_projection_func (C++ function)

Z

z_position_of_maximum_z_projection_func (C++ function)

z_position_of_minimum_z_projection_func (C++ function)